Research
Publications
Inflammatory Breast Cancer: Clinical Implications of Genomic Alterations and Mutational Profiling
FLC Faldoni, RAR Villacis, LM do Canto, CE Fonseca-Alves, SS Cury, SJ Larsen, MM Aagaard, CP Souza, C Scapulatempo-Neto, CABT Osório, J Baumbach, FA Marchi, SR Rogatto
Cancers, MDPI, 2020
DeepCLIP: predicting the effect of mutations on protein–RNA binding with deep learning
AGB Grønning, TK Doktor, SJ Larsen, USS Petersen, LL Holm, GH Bruun, MB Hansen, A Hartung, J Baumbach, BS Andresen
Nucleic Acids Research, Oxford University Press, 2020
De Novo and Supervised Endophenotyping Using Network-Guided Ensemble Learning
SJ Larsen, HHHW Schmidt, J Baumbach
Systems Medicine, Mary Ann Liebert, 2020
Increased levels of genomic instability and mutations in homologous recombination genes in locally advanced rectal carcinomas
LM do Canto, SJ Larsen, BEC Kupper, MDF de Souza Begnami, C Scapulatempo-Neto, AH Petersen, MM Aagaard, J Baumbach, S Aguiar-Jr, SR Rogatto
Frontiers in Oncology, Frontiers, 2019
Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes
AABA Costa, LM do Canto, SJ Larsen, ARG Ribeiro, CE Stecca, AH Petersen, MM Aagaard, L de Brot, J Baumbach, G Baiocchi, MI Achatz, SR Rogatto
BMC Cancer, Springer Nature, 2019
Comprehensive genomic profiling of androgen-receptor-negative canine prostate cancer
R Laufer-Amorim, CE Fonseca-Alves, RAR Villacis, SAD Linde, M Carvalho, SJ Larsen, FA Marchi, SR Rogatto
International Journal of Molecular Sciences, MDPI, 2019
From single drug targets to synergistic network pharmacology in ischemic stroke
AI Casas, AA Hassan, SJ Larsen, V Gomez-Rangel, M Elbatreek, PWM Kleikers, E Guney, J Egea, MG López, J Baumbach, HHHW Schmidt
Proceedings of the National Academy of Sciences, National Academy of Sciences, 2019
The Selection of a Hepatocyte Cell Line Susceptible to Plasmodium falciparum Sporozoite Invasion That is Associated With Expression of Glypican-3
RE Tweedell, D Tao, T Hamerly, TM Robinson, SJ Larsen, AG Grønning, AM Norris, JG King, HC Law, J Baumbach, ES Bergmann-Leitner, RR Dinglasan
Frontiers in Microbiology, Frontiers, 2019
E. coli gene regulatory networks are inconsistent with gene expression data
SJ Larsen, R Röttger, HHHW Schmidt, J Baumbach
Nucleic Acids Research, Oxford University Press, 2018
CoNVaQ: a web tool for copy number variation-based association studies
SJ Larsen, LM do Canto, SR Rogatto, J Baumbach
BMC Genomics, Springer Nature, 2018
CytoMCS: a multiple maximum common subgraph detection tool for Cytoscape
SJ Larsen, J Baumbach
Proceedings of the 2017 International Symposium on Integrative Bioinformatics, De Gruyter, 2017
A simulated annealing algorithm for maximum common edge subgraph detection in biological networks
SJ Larsen, FG Alkærsig, HJ Ditzel, I Jurisica, N Alcaraz, J Baumbach
Proceedings of the 2016 on Genetic and Evolutionary Computation Conference, ACM, 2016